Load directory of xyz in jmol install#

JmolApplet(200, 'load models/caffeine.xyz') Valid examples (see also graphic examples below):ġ.- Put Jmol.js and the set of JmolAppletSigned*.jar and JmolAppletSigned.jnlp files on the top folder level of your website then, for a page in a subfolder:Ģ.- Same for a page in a subfolder two levels below:ģ.- Same as (1) but the model file is in a subfolder (named e.g. mol) must be in the same folder as the applet files or below it (in a subfolder). Instead, indicate true for the second parameter of jmolInitialize to request the all-permissions applet. Note that the 'unsigned' or 'sandboxed applet (JmolApplet0xxxx.jar) is not usable for local deployment anymore. Update: recent versions of Java and browsers (particularly Firefox) apply a more restrictive policy, affecting also the location of html files - A better description is planned for now, see the graphic examples below. This works both locally and on the web server depends on Java security rules, which might change in a future.

Load directory of xyz in jmol install#

Rules for first-time user developing Jmol pages that will run from local disk: Method (a)įor testing purposes, you may wish to install a local web server on your computer. Start Chrome using the command-line flag -allow-file-access-from-files for local file access. That method reads binary files without a problem. This does not apply to files drag-dropped onto the applet or files loaded using '?', which use the HTML5 FileReader object.

That is, no direct file reading with any of the following in their names: No local binary file access in JSmol/HTML5 from standard script commands. Navigate to about:config and set _origin_policy false. You will be able to read both binary and text files locally. Note that you can prompt the page visitor for a local file by using the Jmol script command load ? or a URL using load Specific browser considerations Firefox/Windows That is, in the Info parameter for Jmol.getApplet(name,Info), use jarFile:'JmolAppletSigned0.jar', isSigned: true. If using Java, be sure to use the all-permissions ('signed') applet. JSmol will handle much of the details for local file access. It only relates to HTML5 file access, and it relates only to files loaded using script commands such as LOAD and SCRIPT. This section is in relation to JSmol, Ver. jmolInitialize() is not used anymore.īrowser considerations for local file access (JSmol)

Much of what is on this page is pre-JSmol. 5.1 Conditional use of the signed applet.3 Rules for first-time user developing Jmol pages that will run from local disk:.2 Browser considerations for local file access (JSmol).